Running payroll manually can seem overwhelming, but understanding how to do payroll manually offers cost control and precision for many childcare programs. This approach gives you complete control, whether for a small in-home program or a growing center with multiple staff members.
However, it’s important to note that manual payroll is time-consuming and error-prone, potentially leading to compliance issues or delayed payments. For many childcare businesses, an automated payroll system may offer a more efficient and reliable solution. This article will outline the steps of manual payroll, highlight common pitfalls, and help you determine if it's the right choice for your business.
What is manual payroll?
Manual payroll means handling all employee payment calculations, tax withholdings, and compliance requirements without automated payroll software. Instead of relying on digital solutions, you use spreadsheets, calculators, and paper forms to track hours, calculate gross and net pay, and ensure proper tax compliance.
Many childcare programs choose manual payroll for cost-effectiveness. Payroll software can be expensive depending on your employee count, which adds up quickly for small businesses operating on tight margins. Manual payroll eliminates these recurring fees entirely.
Another option that businesses can consider is outsourcing payroll to a third-party accounting company to help you with the process, but this option can also be costly.
For childcare businesses, brightwheel payroll powered by Gusto, is an easy-to-use payroll solution, enabling you to save time and seamlessly run payroll from the same platform that you use to manage your program, staff, learning, and billing. Automate tax filings, easily review and edit timecards, and run payroll in a click.
Payroll Template for Childcare Programs
A free template to simplify payroll tracking and management.
9 essential steps to run payroll manually
If you’re going to do manual payroll for your childcare business, accuracy is key. Double or triple-check all of your calculations, data, and information throughout the whole process. You can utilize a variety of simple calculators and tools to help you. Also, keep in mind that you’ll have to calculate payroll taxes manually as well. Follow these steps to manually run payroll for your childcare business:
Step 1: Obtain your employer identification number (EIN)
Before hiring your first employee, apply for an EIN through the IRS website. This tax identification number identifies your childcare program as a business entity and is required for all payroll tax filings. The application is free and typically processed immediately online.
Pro tip: Keep your EIN documentation in a secure, easily accessible location. You'll need it for banking, tax forms, and various business transactions.
Step 2: Open a dedicated business bank account
Use your EIN to establish a separate business checking account exclusively for payroll. This separation simplifies bookkeeping and helps maintain clear financial records for tax purposes. Many banks offer business accounts with low or no monthly fees for small businesses.
Step 3: Collect employee documentation
Have each employee complete Form W-4 to document their tax filing status and allowances. Also collect:
- Social Security cards for verification
- Driver's licenses or state IDs
- Direct deposit authorization forms (if applicable)
- Emergency contact information
Store these documents securely and update them whenever employees request changes to their withholdings.
Step 4: Establish your pay schedule
Choose a consistent pay frequency that works for your cash flow and state requirements. Options include:
- Weekly (52 pay periods annually)
- Bi-weekly (26 pay periods annually)
- Semi-monthly (24 pay periods annually)
- Monthly (12 pay periods annually)
Most childcare programs find bi-weekly schedules balance employee expectations with manageable administrative workload.
Step 5: Select your payment method
Decide how you'll distribute paychecks. Options include:
- Paper checks (requires check-printing supplies)
- Direct deposit (requires banking relationship setup)
- Pay cards (prepaid debit cards for employees)
Direct deposit is often most efficient, reducing check-printing costs and ensuring faster access to funds for employees.
Step 6: Implement time tracking systems
Accurate payroll depends on precise time tracking. Establish clear procedures for employees to record their work hours, breaks, and any overtime. Simple time sheets work for small teams, while larger programs might benefit from electronic time clocks or apps.
Step 7: Calculate gross pay accurately
Calculate each employee’s gross pay. For hourly employees, multiply total hours worked by their hourly rate. Include overtime calculations where applicable (typically 1.5x regular rate for hours over 40 per week).
For salaried employees, divide their annual salary by your number of pay periods per year.
Example calculation:
- Employee works 42 hours at $15/hour
- Regular pay: 40 hours × $15 = $600
- Overtime pay: 2 hours × $22.50 = $45
- Total gross pay: $645
Step 8: Calculate deductions and net pay
Subtract required deductions from gross pay to determine net pay:
- Federal income tax withholding
- State income tax (if applicable)
- Social Security tax (6.2% of gross pay)
- Medicare tax (1.45% of gross pay)
- State unemployment tax (varies by state)
- Voluntary deductions (health insurance, retirement plans)
Use current IRS withholding tables and your state's guidelines for accurate calculations.
Step 9: Process payments and maintain records
Issue payments according to your established schedule and maintain detailed records of:
- Pay stubs showing gross pay, deductions, and net pay
- Time sheets or time clock records
- Tax calculation worksheets
- Bank deposit records
- Employee payment confirmations
Keep payroll records for at least four years as required by federal law.
Manual payroll tax calculations made simple
Tax calculations often intimidate childcare providers new to manual payroll, but breaking them into components makes the process manageable.
Federal income tax withholding varies based on each employee's W-4 information. Use IRS Publication 15-T (Federal Income Tax Withholding Methods) to find the correct withholding amount based on filing status, pay frequency, and claimed allowances.
Social Security and Medicare taxes are straightforward percentage calculations:
- Social Security: 6.2% of gross pay (up to annual wage base limit)
- Medicare: 1.45% of gross pay (no limit)
- Additional Medicare: 0.9% on wages over $200,000 annually
State taxes vary significantly by location. Some states have no income tax, while others use flat rates or progressive scales. Check your state's department of revenue website for current rates and calculation methods.
Unemployment taxes include both federal (FUTA) and state (SUTA) components. FUTA is typically 6.0% on the first $7,000 of each employee's annual wages, reduced to 0.6% when you pay state unemployment taxes on time.
Employer tax responsibilities include matching Social Security and Medicare contributions, plus paying unemployment taxes. These don't come from employee paychecks but represent additional costs your childcare program must budget for.
It's essential to consult with a tax professional or certified public accountant (CPA) to ensure you fully understand your tax obligations. They can provide accurate, personalized guidance tailored to your childcare business and help you remain compliant with both federal and state requirements.
Advantages of a manual payroll system
Manual payroll offers several compelling benefits for childcare programs, particularly those in their early stages or operating with limited resources.
- Cost savings: Eliminating monthly software subscriptions can save money that can be reinvested in educational materials, facility improvements, or staff development.
- Control over calculations: A manual process allows you to understand exactly how each number is derived. This transparency helps when answering employee questions or preparing for audits.
- Flexibility: Unlike software that may limit options, manual systems adapt to unique situations like varied pay rates, special bonuses, or unusual deduction requirements.
- Learning opportunities: This deep understanding of payroll mechanics can help you make better business decisions and communicate more effectively with accountants or future payroll providers.
- Simplicity: Manual payroll appeals to many small business owners who prefer straightforward processes over complex software interfaces. Manual systems require no software updates, password management, or technical troubleshooting.
Disadvantages of manual payroll
While manual payroll offers cost-savings and flexibility, it also presents significant drawbacks:
- Time-consuming: Calculating taxes, deductions, and payments for each employee takes considerable time and effort.
- High risk of error: Manual mistakes can lead to compliance issues or employee dissatisfaction.
- Challenging record keeping: Tracking payroll history and generating reports becomes difficult without automated tools.
- Complex compliance: Staying updated with ever-changing tax regulations and rates requires constant monitoring.
- Scalability issues: As your business grows, manual processes quickly become inefficient and unsustainable.
Manual payroll vs automated payroll
Understanding when to use manual versus automated payroll helps childcare programs make informed decisions about their administrative processes.
Manual payroll works best when:
- You have a small number of employees
- Pay structures are simple and consistent
- You have adequate time for calculations and record keeping
- Cost control is a primary concern
- You prefer hands-on control of all processes
Automated payroll becomes valuable when:
- You offer complex benefits or varied pay rates
- Time constraints make manual calculations challenging
- Compliance requirements become overwhelming
- You want integrated tax filing and reporting
Cost comparison considerations extend beyond monthly software fees. Factor in the time you spend on manual calculations, potential error correction costs, and the value of your administrative hours when comparing options.
Brightwheel payroll offers childcare providers an intuitive, all-in-one payroll solution tailored to meet the unique needs of their programs. By automating payroll calculations, tax filings, and direct deposit, it significantly reduces administrative effort and ensures accuracy. With built-in compliance tools, brightwheel helps programs stay aligned with tax regulations, minimizing risk and error. The integration with staff time tracking also ensures payroll is seamlessly handled, saving hours every month. This allows childcare providers to focus more on delivering exceptional care and less on time-consuming payroll tasks, ultimately enhancing efficiency and staff satisfaction.
When to switch from manual to automated payroll
Several indicators suggest it's time to transition from manual to automated payroll:
- Time investment becomes excessive when manual payroll takes more than 4-6 hours per pay period. At this point, software efficiency often justifies the cost.
- Error frequency increases with complexity. If you're making calculation mistakes more than once per quarter, automation reduces risk significantly.
- Growth trajectory matters when planning ahead. If you expect to hire several employees within 12 months, implementing payroll software before you're overwhelmed makes the transition smoother.
- Compliance challenges multiply with employee count and benefit complexity. Software automatically updates for tax law changes and reduces compliance risk.
- Staff requests for direct deposit, online pay stubs, or benefits integration may require capabilities that manual systems can't provide efficiently.
Frequently asked questions
How long does manual payroll take?
Manual payroll typically requires 30-60 minutes per employee per pay period for experienced administrators. New practitioners might need 60-90 minutes per employee initially. Total time depends on pay complexity, benefit deductions, and your comfort level with calculations.
What happens if I make a calculation error?
Address payroll errors immediately by calculating the correct amount and issuing supplemental payments or adjustments in the next pay period. Notify affected employees and document corrections for your records. For tax calculation errors, file amended returns if necessary and consult with a tax professional for guidance.
Do I need special software for manual payroll?
Basic spreadsheet software like Excel or Google Sheets handles most manual payroll needs effectively. You can create templates for time tracking, pay calculations, and tax withholdings. However, you'll still need calculators, tax tables, and forms from the IRS and your state tax authority.
How do I handle payroll for multiple locations?
Multiple locations require careful organization but follow the same basic principles. Use separate spreadsheets or sections for each location while maintaining consistent processes. Consider location-specific factors like local tax requirements or different pay scales. Centralize record keeping while ensuring each location maintains adequate documentation.
Run manual payroll like an expert
For childcare programs, learning how to do payroll manually can be a cost-effective way to maintain control over employee payments and build a solid understanding of payroll mechanics. Success requires attention to detail, consistent processes, and a commitment to accuracy and compliance.
However, as your program grows, manual payroll can become more time-consuming and complex. Transitioning to payroll software or an automated system can help streamline operations, improve accuracy, and save valuable time, allowing you to focus on what matters most—providing quality care.

.png)